Fujita played for Júbilo Iwata, Utrecht, Nagoya Grampus, Roasso Kumamoto and JEF United Chiba.

[2] Fujita attended and played football at Shimizu Commercial High School and University of Tsukuba before joining Júbilo Iwata in 1994.

As a result, FC Utrecht were unwilling to pay the transfer fee required to keep Fujita and he returned to Japan to once again play for Júbilo Iwata at the end of 2003.

[5] Fujita had been managing the Japan Pro-Footballers Association (JPFA, ja[6]) as a chairman for five years with Tetsuro Kiyooka, FIFA players' agent as a chief operating officer and formed the organization as a trade union in 2011[7] as well as represented the all Japanese footballers and the Japan national football team to protect their rights and status.

On July 21, 2017, it was announced he had left VVV-Venlo join English EFL Championship side Leeds United as Head of Football Development (Asia).

[10] In late 2018, Fujita left his role with Leeds United to become head of international relations with the Japanese Football Federation.