The stations on the Navi Mumbai side of the Trans-Harbour line were designed by CIDCO.

Some IT, corporate, and commercial offices, along with shopping malls, are located above some of these railway stations.

The major features of the rail corridors include direct access from residential areas to railway stations by foot, convenient interchange facilities from one corridor to another, double discharge platforms at every station, easy-to-follow routes, and comfortable and pleasant journeys, forming key features of the commuter railway system in Navi Mumbai.

[3] On 19 January 2013, the conversion of all ten rakes on the Trans-Harbour line into 12-car trains was completed.

[5] However, in January 2022, the Central Railway ceased operating the only air-conditioned train on the line, citing a poor response from commuters due to low frequency and exorbitant fares.