This research station is located (13°10'38.06"S, 71°36'16.36"W) in the upper reaches of the river Cosñipata, an affluent of the Madre de Dios River, in the Paucartambo Province, Cusco Region.
The station ranges from 2200 to 3700 m in elevation and includes several Andean ecosystems, such as montane forests, elfin forests, montane scrub and high-Andean grassland (puna).
These ecosystems are connected by a series of trails and by the road Paucartambo-Shintuya.
The station was established in 2005 and is managed by two non-governmental organizations: the Peruvian NGO Asociación para la Conservación de la Cuenca Amazónica (ACCA) and the US-based Amazon Conservation Association (ACA), which also manages the Los Amigos Biological Station in the lowland rainforest of southeastern Peru.
Current research at Wayqecha includes a multidisciplinary project studying carbon cycling in soils and montane forests and their response to climate change, and studies of plant and animal diversity patterns along the Andean elevational gradient.