Werner Lempert is a retired East German slalom canoeist who competed in the 1960s.

He won two medals at the ICF Canoe Slalom World Championships with a gold in 1965 (Mixed C-2 team) and a silver in 1963 (Mixed C-2).

Lempert also served as the general secretary of the German Football Association of the GDR (DFV) between 1974 and 1983.

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