Scholar Mark Ravina used Yonezawa as a case study[2] in analysing the political status and conceptions of statehood and identity in the feudal domains of the Edo period (1603–1868).
Their income and territory worth 1,200,000 koku was reduced to 300,000, and they were forced to leave their holdings in Aizu, and were allowed to keep only Yonezawa, which they recovered from Naoe Kanetsugu.
The Uesugi demanded respect for the shogunate from their retainers, and forbade public criticism, but only imposed and enforced those edicts and policies set by the central authorities which they chose to.
He suggested that the clan adopt Uesugi Tsunanori, the son of Tsunakatsu's younger sister and Kira Yoshinaka as heir, although this would mean splitting the domain in half, down to only the 150,000 koku portion within Dewa province.
In order to finance castle repairs imposed upon his domain by the shogunate, Harunori asked his retainers to agree to a reduction of their stipends.
As a result of these various measures, Yonezawa again became fairly prosperous, and did not suffer much from the great famine which swept Japan in the Tenmei era (1781–89).
When the Boshin War erupted in 1868, and the shogunate came to an end with the abdication of shōgun Tokugawa Yoshinobu, the Uesugi joined the "Northern Alliance" (Ōuetsu Reppan Dōmei), voicing their support for the embattled Aizu domain and opposing Satsuma and Chōshū domination of the new imperial government, while stating an intent to "reconquer Japan, that the Emperor may indeed reign over it.