In March 2000, he became co-head of Department of Sports in the structure of the joint interim administration that was the highest advisory body to UNMIK.

The work of Pajaziti has focused on European integration and standards issues in humanitarian assistance for displaced persons, sport and promoting activities for young people.

[2] During his work as Minister of Internal Affairs, Pajaziti has prioritized key issues such as law and order, and launched campaigns to combat organized crime and trafficking in human beings.

Minister Pajaziti has given priority to international cooperation on policing and security, and close relations with regional states.

Under his leadership, the Ministry of Internal Affairs was responsible for planning and implementation issues for civil documents, including Kosovo passports, identity cards and driving licenses.