Enyimba of Nigeria defeated Étoile du Sahel of Tunisia in the final to win their second title.

1 US Stade Tamponnaise refused to participate; they were banned from CAF competitions for two years and fined $3000.

2 AS Tempête Mocaf and Ulinzi Stars withdrew before 1st leg.

3 ASC Nasr de Sebkha withdrew before the 2nd leg.

The top scorers from the 2004 CAF Champions League are as follows: