The 2006–07 Czech Cup was the 14th edition of the annual football knockout tournament organized by the Czech Football Association of the Czech Republic.
It began on 22 July 2006 with the preliminary round and ended with the final on 24 May 2007.
Sparta Prague prevailed at the 24 May 2007 Cup and qualified for the 2007–08 UEFA Cup but as they also qualified for the Champions League via the Czech First League in the same season, the place went to Jablonec 97 as runner-up.
The preliminary round took place on 22 July 2006.
The fourth round was played on 25 October 2006.