NOTE: Prior to the 2006 season, NCAA Division I-A was renamed NCAA Division I Football Bowl Subdivision (FBS), and NCAA Division I-AA was renamed NCAA Division I Football Championship Subdivision (FCS).

The 2006 NCAA Division I FCS football season, the 2006 season of college football for teams in the Football Championship Subdivision (FCS), began on August 26, 2006 and concluded on December 15, 2006, in Chattanooga, Tennessee, at the 2006 NCAA Division I Football Championship Game where the Appalachian State Mountaineers defeated the UMass Minutemen, 28–17.

[3] There are several rules that have changed for the 2006 season.

[4] Following are some highlights: December 15Finley StadiumChattanooga, Tennessee * Host institution The Gridiron Classic is an annual game between the champions of the Northeast Conference and the Pioneer Football League that has been held since December 2006.

Standings are from The Sports Network final 2006 poll.