The winter break commenced after 19 November 2011 and the league restarted on 10 March 2012.
[1] FK Ústí nad Labem secured promotion to the Czech First League on 12 May 2012.
[2] However, due to their stadium, which did not comply with league regulations, Ústí were not granted a license to play in the following season's Czech First League.
The promotion place therefore went to fourth-placed Brno.
[3] Promoted to Czech First League Relegated to Moravian-Silesian Football League Relegated to Bohemian Football League Opava returned to the Czech Second Division after a one-season absence, winning promotion from the MSFL at the first attempt.