He was born to the house of Afghanistan's most influential spiritual and religious family in Kabul at the home and monastery of his respected grandfather at the Naqshbandi Khanaqah in Qala-e-Jawad.
While the Mojadidi women and children were freed after a year, the whereabouts of his father Shaykh M. Ismaiel Mojadidi Dean of Nurul Madariss Farouqi in Ghazni and head of Khuddamul Furqan, his grandfather Shaykh Ziaul Mashah'ikh Mohammad Ibrahim Mojaddidi head of the Naqshbandi-Mojadidi Tariqah, uncles, and 140 other male relatives are unknown till this day.
[3] It is said that Abobaker's grandfather had been informed that government forces planned an attack on the family, and was asked to leave the country for his own safety.
Abobaker Mojadidi is a direct descendant of the second Khalifah of Islam, Omar Ibn El Khattab Sayyidina Umar, and Shaikh Ahmad Sirhindi, revered as Mujaddid Alf-i-th(s)ani Imam Rabbani.
While attending John F. Kennedy High School he brokered a truce between gang members and began his teaching of his faith Islam.
[5] Abobaker Mojadidi has studied under distinguished traditional Afghan scholars or Ulema in Afghanistan namely Shaykh Khaifa Dod Mohammed Ghaznavi, Ustadh Abdul Sattar Seerat Taloqani, Mawlawi Nasrullah Mansour (former leader of Harakat-Inqilab-i-Islami), and others.
Abobaker Mojadidi has organized workshops, small and large scale community dialogues and events focusing on behavioral health wellness, including domestic violence, youth violence, gang activity, substance abuse; interfaith exchange, and intercultural peaceful existence.
[8] [9] Abobaker Mojadidi has aggressively advocated against Predator drone military airstrikes and has been a vocal critic against civilian casualties in Afghanistan.