It is the northern terminus of the standard gauge Porrentruy–Bonfol railway line of Chemins de fer du Jura.

[1] The line formerly continued across the French border to Pfetterhouse; passenger service ended 1946 and the line was abandoned in 1970.

[4] The station was renovated in 2022 as part of a larger rehabilitation of the Porrentruy–Bonfol railway line.

Train services were occasionally replaced by buses, and passengers boarded from temporary platforms 350 metres (1,150 ft) south of the station.

[5][6] As of the December 2023 timetable change,[update] the following services stop at Bonfol:[7]