The museum features ten sections including a re-creation of the Japanese consulate office in Lithuania.

Sections A and B provide visitors with background knowledge of the Holocaust and Jewish persecution by the Nazis.

Sections C-E discuss Sugihara's decision to issue visas and how he helped Jews flee Europe.

Sections F-J discuss the impact that Sugihara's visas had on those who escaped, and these sections also feature messages of gratitude from Jewish refugees and the Tsuruga Landing Accounts, stories from many Jewish refugees who eventually escaped to the Japanese port of Tsuruga.

[10] However, due to lack of buses and problematic transfers most visitors choose to take a rental car.