In response to a need for trained Christian leaders, the college was established in 1940 as a Bible school in Stouffville, Ontario by Ward M Shantz.

In 1982 the college received its accreditation by the Association for Biblical Higher Education, following the passing of a provincial Act giving it the right to grant degrees.

[2] The college's mission statement is: "Through academic training and hands on ministry and service, Emmanuel prepares Christ followers who are committed to making a difference in their world."

Originally held in the basements of the Stouffville and Gormley Mennonite Brethren in Christ Churches, Emmanuel purchased a house on Ahrens St. in Kitchener, Ontario in 1943.

The college met on Ahrens St. until 1964, when it moved to its location on Fergus Ave. with a newly constructed administration building.