The National Football Academy of Lithuania (NFA, in Lithuanian Nacionalinė Futbolo Akademija) was established in 2006.

In the 2012 season, it played in the I Lyga, the second tier of the Lithuanian football system, and finished in 6th place.

FK NFA withdrew mid-season and their license was taken over by FC Stumbras, who went on to reach the first place.

In 2019, the management of the academy was taken from LFF (Lithuanian Football Federation) over by the Kauno Futbolo Akademija (Be1SC) and the club was renamed to Be1 NFA.

On 15 June 2021, the club lost 0–6 against FC Džiugas Telšiai in the second round of the 2021 Lithuanian Football Cup and was knocked out of the competition.

Kit manufacturer; Nike (2021–) Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.