Founded in 2017, it is the phoenix club of FK Jelgava, taking its place in the Latvian Higher League (Virslīga).

In the 2024 Latvian Higher League season, FS Jelgava ended up at the bottom of the table, but escaped relegation due to the denial of a Virslīga licence to Valmiera FC for the 2025 season.

Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.

Note: Flags indicate national team as defined under FIFA eligibility rules; some limited exceptions apply.

Dylan Georges Maes, an U23 centre back for Rwanda, signed with FS Jelgava for a one-year contract in March 2024.