Flowing Wells offers several AP courses, including Biology, Psychology, Environmental Science, Chemistry, U.S. History, European History, Human Geography, Macro/Micro Economics, English III and IV, Pre-calculus, Calculus AB, Computer Science Principals, Spanish, and Statistics.

Flowing Wells also has a dual-enrollment programme with Pima Community College.

The high school also places a high value on arts education and never charges students fees for sports participation, with items such as sports uniforms being free for all participating students.

Spirit Week (where a theme is chosen every day that students are encouraged to dress as) is similarly done before pep assemblies.

Every day during morning announcements, Jim Brunenkant asks a trivia question.