That season's edition was the first to be entitled "Hellas On Line Greek Cup".

The competition started on 26 August 2006 and concluded on 5 May 2007 with the Final, held at the Panthessaliko Stadium.

[2] Each tie in the knockout phase, apart from the quarter-finals and the semi-finals, was played by a single match.

The team that scored more goals on aggregate over the two legs advanced to the next round.

If no goals were scored during extra time, the winners were decided by a penalty shoot-out.