Town had been formed in the 1800s and won the Huntingdonshire Senior Cup eleven times before World War I.

In 1988 Huntingdon joined the newly formed Division One of the Eastern Counties League and finished ninth in their first season.

[3] Huntingdon dropped into the East Midlands Alliance, before switching to Senior Division A of the Cambridgeshire League.

In 2016–17 Huntingdon won the Creake Charity Shield, beating Chatteris Town reserves 5–0 in the final,[4] and were champions of Division 1B, remaining unbeaten during the league season,[5] earning promotion to Senior Division B.

The following season saw them win the Percy Oldham Memorial Cup and the Senior Division B title, securing a second successive promotion.