The first offical visit of Slovak prime minister was after the Assassination of Yitzhak Rabin as the Slovak prime minister Vladimír Mečiar attended the funeral of Yitzhak Rabin on 6 November 1995.

On 14 May 1997 Israel and Slovakia have signed an agreement on abolition of visa requirement which entered into force on 2 September 1997.

In November 2003 the Prime Minister of Slovakia Mikuláš Dzurinda had an official visit to Israel.

In 2018 the head of the Slovak National Council Andrej Danko told the Israeli President Reuven Rivlin that Slovakia will move its embassy to Jerusalem.

[6] On the first of September 2021 Slovakia established the Slovak Institute in Jerusalem with the main task is to deepen Slovak-Israeli cultural dialogue.