Jan Bartůněk (born 13 February 1965) is a Czechoslovak sprint canoeist who competed in the late 1980s and early 1990s.

He won two medals in the C-1 10000 m at the ICF Canoe Sprint World Championships with a silver in 1990 and a bronze in 1989.

Bartůněk also competed at the 1992 Summer Olympics in Barcelona, finishing eighth in both the C-1 1000 m and the C-2 500 m events.

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