On December 4, 1994, an unknown group carried out an arson attack on the printing plant in Weimar where the newspaper was produced.

In 2016, the British weekly magazine The Economist noted the grown reputation and influence of Junge Freiheit amid the surge of the Alternative for Germany and concluded that "the presence of a right-wing voice in Germany’s media landscape is part of the country’s path to political normality".

JF was involved in a legal battle relating to the freedom of the press against two local State Offices for the Protection of the Constitution in which the newspaper was represented by its lawyer, and frequent supporter, the former German Attorney-General Alexander von Stahl (FDP).

The Offices for the Protection of the Constitution in two federal states, North Rhine Westphalia and Baden-Württemberg, mentioned Junge Freiheit in their yearly reports of alleged "anti-constitutional activities" between 1995 and 2005, along with most publications and organizations affiliated with the Left Party.

Its prominent contributors include Holger Zastrow, Wolf Jobst Siedler, Frederick Forsyth, Alain de Benoist, Paul Gottfried, Elliot Neaman, Rolf Hochhuth, Ralph Raico, Derek Turner, Billy Six, Klaus Rainer Röhl and Fritz Schenk.