Karakoksha (Russian: Каракокша; Altay: Кара-Кӧкши, Kara-Kökşi) is a rural locality (a selo) and the administrative centre of Karakokshinskoye Rural Settlement of Choysky District, the Altai Republic, Russia.

Karakoksha is located southeast of Gorno-Altaysk, in the valley of the Sarakoksha River, 54 km south of Choya (the district's administrative centre) by road.

Kuzya is the nearest rural locality.

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