On January transfer window of 2014, he joined Atromitos from Gamma Ethniki club Aiginiakos.
[1] On 3 March 2014, he made his debut for the first team in a home game against Panionios.
In 21 August 2017, he scored his first goal in the Superleague with the club in a 1–1 home draw against Apollon Smyrni.
On 1 October 2017, he scored with a header helping his club to win 1–0 champions Olympiacos at Karaiskakis Stadium.
[2] On 8 April 2019, Kivrakidis scored the game’s only goal as Atromitos defeated SuperLeague basement club Apollon Smyrni 1–0 to move three points clear of Aris in fourth spot.