When the pirate crew are taking a picture of the legendary emerald coconut for their photo album, Captain Hook steals it and get Jake and Izzy caught in a booby trap.
Jake and his crew try to rescue a firefly named Brightly who is stolen by Captain Hook who uses it to light the way in the night while looking for the golden twilight treasure in Big Bug Valley.
Guest stars: Lisa Loeb as Winger and Adam West as Wise Old Parrot Mr. Smee plans a treasure hunt to make Captain Hook happy and enlists Jake, Izzy, and Cubby to help.
Guest star: Ariel Winter as Marina the Mermaid In a Christmas episode, the gang discovers that Peter Pan has left presents and a tree for the crew.
Guest star: Jane Kaczmarek as Red Jessica Marina's sister Stormy puts Captain Hook, Mr. Smee, and Cubby under the spell of The Mermaid's Song to gather 3 things: Seaweed, Seashells, and Coconuts.
Guest star: Sharon Osbourne as Mama Hook Captain Flynn asks Cubby to help how to read a treasure map to a magic goblet which is always filled with water.
Jake's pirate puppy Patch finds many treasures and puts them in a basket, but forgets to take them home with him, so Izzy decides to deliver them to him before Captain Hook tries to steal them.
Guest stars: Lisa Loeb as Winger and Adam West as Wise Old Parrot There's an island that mysteriously vanishes and reappears in a different place, so Jake and the crew discover it before Captain Hook gets to it.
Bucky is covered up with barnacles, so Jake and his crew cure him with a "Zebra Rose" while Captain Hook on the other hand, misunderstands this thinking that he wants that for his crush Red Jessica.
Guest star: Jane Kaczmarek as Red Jessica A baby sea serpent named Slink follows the crew home to Pirate Island, so Cubby must return him to his mother but first he needs to get him back from Captain Hook who plans to use him for his own zoo.
Guest stars: Ariel Winter as Marina, Allisyn Ashley Arm as Stormy, and Jane Kaczmarek as Red Jessica Cubby and Bones both audition to become Captain Flynn's sand pirates.
Guest stars: Teri Hatcher as Beatrice Le Beak; Jane Kaczmarek as Red Jessica Cubby loses his treasured Skull-N-Bones marble, but in the process finds a map to Never Land's mythical Treasurefalls.
Guest star: Rhys Darby as Percy the Penguin Captain Hook discovers a bad smell and it's coming from Bones's new pet, the stinky Skunk Bug.
Jake's crew help Captain Flynn find the Never Land ankh, located inside Wander the pirate mummy's tomb, so he can remove his ship, the Barracuda, from a sand dune.
Guest stars: Teri Hatcher as Beatrice Le Beak and Jane Kaczmarek as Red Jessica Jake and his crew discover an interesting ring and use it to turn themselves invisible.
When Skully gets a mirror as a gift, he can't stop admiring his own reflection while Jake, Izzy, and Cubby found out that all the big booms were actually Captain Hook's plan on making his own monument on Butterfly Bluff.
The magic only lasts when all 3 air horns are blown then Buck will be reverted to Mr. Smee including the Jolly Roger that Pip shrinks back to a big ship.
Guest star: Tiffani Thiessen as Misty the Wonderful Witch Jake and his mates journey to the Valley of the Lost to find Cubby's missing map.
Guest stars: Tori Spelling as Pirate Princess and Lisa Loeb as Winger Nanny Nell arrives to help Captain Hook make the Jolly Roger ship-shape.
Guest stars: Allisyn Ashley Arm as Stormy and Leigh-Allyn Baker as Queen Coralie Hook turns into a genie after stealing a magic lamp.
Guest star: Teri Hatcher as Beatrice Le Beak Jake and his crew force Captain Hook to help Queen Coralie, who has been cast under a magical sleeping spell.
Guest star: Tiffani Thiessen as Misty the Wonderful Witch Michael and John love hearing Wendy's stories about Never Land, especially when Peter Pan outsmarts Captain Hook.
Guest star: Tyrel Jackson Williams as Finn the Mer-Boy Jake and his crew take their challenge in a life-sized pinball game in order to find a hidden treasure.
Guest stars: Harland Williams as Captain Frost, Ariel Winter as Marina the Mermaid and Tori Spelling as Pirate Princess Jake and his crew help their pal Percy set off in search of the legendary Snow-Foot, a boy-yeti with really big feet.
Guest stars: Rhys Darby as Percy the Penguin and Rico Rodriguez as Snow-Foot Finn the Mer-Boy takes Jake on an underwater excursion to go Wreck Racing with his old friend Smiley the Never Shark.
Guest star: Chris Kattan as King Zongo Jake and his mates help Captain Hook after he accidentally releases three prankster ghosts who vow to never leave the Jolly Roger.
Guest stars: Estelle Harris as Peg-Leg Peg, Carl Reiner as Captain Treasure Tooth and Bill Farmer as Ghostly Bob Note: This is the last episode where Jonathan Morgan Heit voices Cubby due to hitting puberty.
Guest star: Jane Kaczmarek as Red Jessica, Josh Duhamel as Captain Flynn and Teri Hatcher as Beatrice Le Beak Jake and his crew are looking for a creature named Ratsputin.
Guest star: Chris Kattan as King Zongo ShiverJack's nephew ChillyZack tries to impress his uncle by capturing Captain Jake and his crew, but fails and ends up befriended by them.
Guest star: Kevin Michael Richardson as Chaos Khan Peter Pan gifts Captain Jake and his crew with a set of Pirate Power Bandanas.