Non-covalent interactions index

The Non-Covalent Interactions index, commonly referred to as simply Non-Covalent Interactions (NCI) is a visualization index based in the Electron density (ρ) and the reduced density gradient (s).

It is based on the empirical observation that Non-covalent interactions can be associated with the regions of small reduced density gradient at low electronic densities.

[1] Its visual representation arises from the isosurfaces of the reduced density gradient colored by a scale of strength.

The strength is usually estimated through the product of the electron density and the second eigenvalue (λH) of the Hessian of the electron density in each point of the isosurface, with the attractive or repulsive character being determined by the sign of λH.

This allows for a direct representation and characterization of non-covalent interactions in three-dimensional space, including hydrogen bonds and steric clashes.

[2][3] Being based on the electron density and derived scalar fields, NCI indexes are invariant with respect to the transformation of molecular orbitals.

Within the Density Functional Theory framework the reduced density gradient arises in the definition of the Generalized Gradient Approximation of the exchange functional.

in which kF is the Fermi momentum of the free electron gas.

[6] The NCI was developed by Canadian computational chemist Erin Johnson while she was a postdoctoral fellow at Duke University in the group of Weitao Yang.

NCI representation in 3D and 2D of a three water molecules cluster
NCI representation in 3D and 2D of a six water molecules cluster
NCI representation in 3D and 2D of an eight water molecules cluster