The Panama Bight ecoregion is home to rich coral beds in the near shore waters.
In addition to the coral beds, enclaves of Panama Bight mangroves can be found in the tidal zone.
El Niño climate events have warmed the water of this ecoregion, which has led to bleached and killed coral.
Outbreaks of the crown-of-thorns starfish (Acanthaster planci) have also reduced coral populations.
Additionally threats include deforestation on shore and destruction of the reefs due to fishing, as well as damage from domestic pollution, dam construction, mining, oil shipping, and pesticides.