Rated one of the top high school players in the country, Wojciechowski was named to the East squad of the 1994 McDonald's All-American Team, playing against future Duke teammates Trajan Langdon and Ricky Price.

A captain during his senior year, Wojciechowski led that 1997–98 team to a 32–4 record and a #1 ranking in the final AP regular season poll.

In the NCAA tournament, the Duke team reached the South Regional final, losing to the eventual champion, Kentucky, 86–84.

Compiling an overall record of 441–92 during his time as an assistant and associate head coach, the Blue Devils won the NCAA championship in 2001 and 2010.

[4] On April 1, 2014, Wojciechowski was hired as the new Marquette head basketball coach, replacing Buzz Williams, who left for Virginia Tech.