Sir Thomas Scott (1535 – 30 December 1594), of Scot's Hall in Kent, was an English Member of Parliament (MP).
In his first Parliament, he was appointed to a joint committee with the House of Lords to confer with the Royal lawyers on how to deal with Mary, Queen of Scots.
On 15 May 1572, in the debate following the committee's report to the Commons, he regaled the House with his conclusion, that the Scots Queen was not the root of the mischief: "Rather, as a good physician before prescribing medicine, he would seek out the causes.
His attack on the Catholics caught the imagination of the Puritan members, and he was forthwith appointed to the head of a small committee "to search certain houses in Westminster suspected of receiving and harbouring of Jesuits, seminaries or of seditious and Popish books and trumperies of superstition."
But he did not neglect his own advice on more practical military defences: at the time of the Spanish Armada the following year, he was appointed head of the defensive force assembled to meet any invasion in Kent, and equipped four thousand men at his own expense within a day of receiving his orders.