After its start at the corner of Second and Marr streets in downtown Fond du Lac next to St. Peter's Church, the academy was moved in 1955 to its current location at 475 E. Merrill Avenue.

[1] On September 30, 2020, WLA bought 120 acres (49 ha) of land west of Fond du Lac and intends to build a new campus at this location.

[2] As of the 2017–18 school year, WLA enrolled 303 students, 288 of whom were white, 11 were Asian, three were black, and one was Hispanic.

[3] The athletic teams at Winnebago Lutheran Academy are known as the Vikings and their colors are royal blue and white.

[4] Their primary rival is the Ledgers of St. Mary Springs High School, also in Fond du Lac.