The 1999 DFB-Ligapokal was the third edition of the DFB-Ligapokal, and, for the third consecutive year, was won by Bayern Munich.

Bayern, the previous year's League champions, beat Werder Bremen in the final, a reverse of the previous year's cup final.

A total of six teams qualified for the competition.

The labels in the parentheses show how each team qualified for the place of its starting round: