2005–06 Bosnia and Herzegovina Football Cup was the twelfth season of the Bosnia and Herzegovina's annual football cup, and a sixth season of the unified competition.
The competition started on 21 September 2005 with the first round and concluded on 3 May 2006 with the final.
Thirty-two teams entered in the first round.
The matches were played on 21 September, 4 and 11 October 2005.
Orašje won 3–0 on aggregate.