Agnes River rises below Beech Hill in state forestry area within the Strzelecki Ranges, and flows generally south in a highly meandering course, before reaching its mouth in Corner Inlet of Bass Strait, southeast of the town of Toora in the South Gippsland Shire.

The river is traversed by the South Gippsland Highway between Toora and Welshpool.

In the Aboriginal Brataualung language the name of the river is Kut-wut, with no defined meaning.

[5] The river derives its current name from the Ages River, after Agnes, daughter of John Gellion, an early settler,[2] and was named by Governor La Trobe in 1845 in honour of his daughter, Agnes.

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