[3] With Ikaros, Lykogiannis won the Greek 2nd Division championship in 2010.
He was the coach of Kolossos Rodou of the Greek League from 2014 to 2018.
In 2018, he became the head coach of the newly promoted to the Greek Basket League club Holargos.
[5] He returned once more to Kolossos Rodou for the 2019–2020 season, but parted ways with them on 3 August 2020.
On 10 December 2020 Lykogiannis was appointed as the new head coach of PAOK.