Fujimigaoka Station is served by the 12.7 km Keio Inokashira Line from Shibuya in Tokyo to Kichijōji.

The station consists of a single ground-level island platform serving two tracks.

Construction of the current station building began in March 2010, and was completed in December of the same year.

There are elevators and escalators between the station building concourse and platform, and to the ground level at the north and south exits (though there is no escalator between the station building and ground level at the south exit).

The underground passage that was previously used to connect to the old station building until December 2010 has been maintained as a free passageway for pedestrians to cross the tracks on the south side.