To counter the power of the ruling Zamorin of Calicut, the Portuguese forged alliances and established factories in three smaller rival coastal states, Cochin (Cochim, Kochi), Cannanore (Canonor, Kannur) and Quilon (Coulão, Kollam).
The Sixth Armada (1504), under Lopo Soares de Albergaria had dropped off a larger Portuguese garrison and a small coastal patrol to harass Calicut and protect the allied cities.
But it only served to alert King Manuel I of Portugal that the sleeping Mameluke giant had been awakened, that something large was afoot, and that the Portuguese had better secure their position in the Indian Ocean before it was too late.
So the Almeida expedition of 1505, the 7th Armada to the Indies, had the double objective of securing the Portuguese position in India against Calicut and in East Africa against Kilwa, before the Egyptian-led coalition cobbled their naval strike force together.
John II's successor, King Manuel I of Portugal, was a more traditional monarch, happy in the company of high nobles, with a more Medieval outlook, including an eagerness to spread religion and pursue 'holy war'.
The 'Medievalists' in the Portuguese court, notably Duarte Galvão, now wanted to give the India expeditions the glitter of a crusade, presenting it as the opening of a 'new front' in a holy war on Islam, a resumption of the old reconquista.
Court pragmatists like D. Diogo Lobo, Baron of Alvito, the powerful vedor da fazenda, fought hard to keep the India armadas from being diverted into messianic pursuits by Duarte Galvão's clique.
In effect, it announced that the Portuguese would no longer be content to merely trade for spices, that they were going to establish a Christian state in the east, to spread religion, make alliances and launch a Holy War on the eastern flank of Islam.
Although the captain-majors of Portuguese India armadas claimed to be ambassadors for a distant King of Portugal, and delivered royal letters of communication, Indian potentates doubted whether these captains actually represented anyone at all.
Many suspected they were simply self-aggrandizing private merchants and pirates, trying to extract favorable trade terms for themselves by falsely claiming some exalted authority, to be speaking on behalf of some foreign potentate.
The Zamorin of Calicut had at one point demanded to send ambassadors to the royal court of King Manuel I of Portugal, since he didn't believe the armada captains really had any authority to negotiate treaties in his name.
Almeida's plan was to only open a few critical coastal and island fortresses at strategic locations, just enough to allow the Portuguese navy to range over the length and breadth of the Indian Ocean, rather than attempt ruinous large territorial conquests.
The foundering of Pêro de Anaia's Sant'Iago (sometimes referred to as the Nunciá) in the Tagus harbour upon departure, prompted the immediate assembly of another six-ship fleet that set out a month later.
The king arranged for a corps of one hundred halberdiers to serve as the vice-roy's personal guard, largely to allow Almeida to impress and match the ceremonial pomp of Indian princes.
[13] The Secretary's exact authority and functions, however, were not clearly defined, with the result that the ambitious Pereira would try to carve out a large share of the government of Portuguese India for his office and clash frequently with Almeida.
Vasco Gomes de Abreu had a commission to head a patrol off Cape Guardafui, with instructions prey on Arab shipping around the mouth of the Red Sea and keep an eye out for the Egyptian fleet.
(See Anaia's expedition to Sofala) June 26, 1505 – Almeida's squadron doubles the Cape of Good Hope with some difficulty, meeting a violent storm on the other side, during which some ships are separated..
Hearing of neither of them, nor of Gonçalo de Paiva (still on errand to Mozambique), nor, for that matter, any news of the squadron of Manuel Paçanha by July 18 Almeida decides to press on and sets sail north.
Intent on collecting the annual tribute (imposed 1502) owed to the king of Portugal, Almeida fires his guns in salute, but, after receiving no reply for the courtesy, sends João da Nova to lead inquiries into why.
Messages are shuttled back and forth between Francisco de Almeida and Kilwa's strongman ruler Emir Ibrahim (Mir Habraemo), the latter of whom seems to be doing his utmost to avoid a meeting.
His choice falls on Muhammad ibn Rukn ad Din (Arcone or Anconi), a wealthy Kilwan noble who had earlier promoted a Portuguese alliance and more recently, during the message phase, secretly entered into contact with João da Nova.
As a result, he insists on appointing Muhammad ibn al-Fudail (Micante, son of the late sultan murdered by Emir Ibrahim) as his successor, claiming he, Arcone, is only holding the throne 'temporarily'.
They return shortly after, bringing not only fresh supplies and the Sultan of Malindi's congratulations and rewards, but, much to Almeida's surprise, also Lopo Chanoca and João Homem, captains of two of the caravels of Paçanha's squad.
As per the orders received in Lisbon, Almeida immediately begins the construction of a Portuguese fortress on the island – Fort São Miguel of Angediva, principally with local stone and clay.
During the construction, Almeida dispatches two caravels under João Homem to speed down the coast and visit the Portuguese factories at Cannanore, Cochin and Quilon to announce the 7th Armada's arrival in India.
This gesture (and news of the fate of Kilwa & Mombasa) prompts the governors of Cintacora[28] and Onor (Honnavar) to quickly dispatch emissaries to Almeida at Angediva, with gifts and promises of a truce with the Portuguese.
Naturally Paçanha is delighted to find two of his missing caravels – João Homem and Lopo Chanoca – are safely with Almeida, but there is still no news of the remaining two – Lopo Sanchez (aground near Quelimane) and Lucas da Fonseca (by now probably safely in Mozambique, but the monsoon season too late to allow him an ocean crossing) Construction finished, Almeida appoints Manuel Paçanha as captain of Fort São Miguel of Anjediva, with a garrison of 80 troops, a galley and two brigantines (acquired locally?
[32] Having recently acquired a small stretch of the Malabar Coast around Bhatkal (Batecala), Narasimha Rao is probably anxious to ensure the Portuguese do not molest the importation of warhorses from Arabia and Persia, so essential for his armies.
In September (or November[37]) 1505, the ships of Cide Barbudo (nau Julioa) and Pedro Quaresma (caravel of uncertain name) left Lisbon, carrying instruction letters from King Manuel I of Portugal for Anaia in Sofala and Almeida in India.
December 1506 – Third return fleet arrives in Lisbon – actually, only nau São Gabriel of Vasco Gomes de Abreu, carrying Almeida's official report and the baby elephant.