Owing to licensing issues, the soundtrack does not include the film versions of two cues, Free Flight and Double Trouble.

However, despite being billed as the complete score, that album did not include a number of cues from the film, such as the extended version of the track "The Bane Transformation" and the cue directly after it, "The Bane Voyage".

Though reviews of this soundtrack have been relatively scarce in comparison to the first one, the overall reaction to the release has been positive.

Davis's tracks "Burly Brawl (Alternate)" and "Chateau Swashbuckling (Alternate)" were unused in favor of alternate versions by Juno Reactor and Rob Dougan, respectively, with the latter portion of the unused "Burly Brawl" is heavily modified in the film to become the latter portion of the final film version of "Burly Brawl"[citation needed].

Additionally, Davis's version of "Double Trouble" was altered in the film with the addition of samples from the song "Dread Rock" by Oakenfold[citation needed], which is found on the first Matrix Reloaded soundtrack.