Transcription factory

The type of proteins present include: ribonucleoproteins, co-activators, transcription factors, RNA helicase and splicing and processing enzymes.

In these studies heat shock was used to turn off transcription which resulted in no change in the number of polymerases detected.

[8] Upon further analysis of western blot data it was suggested that there was in fact a slight decrease over time of transcription factories.

GFP polymerase fluorescence experiments have shown that the inducement of transcription in Drosophila polytene nuclei leads to the formation of a factory which contradicts the notion of a stable and secure structure.

[10] It was previously thought that it was the relatively small RNA polymerase that moves along the comparatively larger DNA template during transcription.

However, increasing evidence supports the notion that due to the tethering of a transcription factory to the nuclear matrix, it is in fact the large DNA template that is moved to accommodate RNA polymerisation.

[6] Chromosome Conformation Capture (3C) also supports the idea of the DNA template diffusing towards a stationary RNA polymerase.

It has been proposed that the factories are responsible for nuclear organisation; they have been suggested to promote chromatin loop formation by two potential mechanisms: The first mechanism suggests that loops form because 2 genes on the same chromosome require the same transcription machinery that would be found in a specific transcription factory.

Gene translocation events, like point mutations, generally are detrimental to the organism and so therefore could lead to the possibility of disease.

A generic transcription factory during transcription, highlighting the possibility of transcribing more than one gene at a time. The diagram includes 8 RNA polymerases however the number can vary depending on cell type. The image also includes transcription factors and a porous, protein core.
The hypothesis that it is the transcription factory that remains immobilised during transcription as opposed to the DNA template. It shows how a section of the gene being transcribed (brown) gets pulled and shuttled through the RNA polymerase during the process.
The attraction of related genes to RNAP and the required transcription factors causes the formation of a chromatin loop, thereby affecting the genome structure