Also in the thirteenth century, Goffredo da Bussero in the Liber Notitiae Sanctorum Mediolani lists an altar dedicated to St. Victor martyr in the Villa Cortese site.

A parchment dated 1312 mentions the Scazzosi family, powerful in the area and also having properties in the surrounding areas; an Ambrogio Scazzosi appears in the list of Merchants of fine wool with brand and registration number, dated 9 November 1403, living in Villa Cortese and dependent on the Parish of Olgiate Olona, in the Duchy of Milan.

Suppressed by Napoleon who annexed it to Dairago, the Municipality of Villa Cortese was restored by the Austrians, but again abolished in 1868 by Victor Emmanuel II with the Royal decree 5192, which this time united it with Busto Garolfo, a neighboring and rival town.

The municipal building is equipped with a photovoltaic system for the production of electricity and hot water, as well as the middle and elementary schools.

[3] The name of Villa Cortese comes to the national sports news starting from the 2006–2007 season, when the MC-PietroCarnaghi, women's volleyball team, arrives from B2 to B1, the following year is promoted to A2 and in 2009 wins the playoff for enter the Serie A1.