Catenane

The second approach relies on supramolecular preorganization of the macrocyclic precursors utilizing hydrogen bonding, metal coordination, hydrophobic effect, or coulombic interactions.

These non-covalent interactions offset some of the entropic cost of association and help position the components to form the desired catenane upon the final ring-closing.

More recently, the groups of Sanders and Otto have shown that dynamic combinatorial approaches using reversible chemistry can be particularly successful in preparing new catenanes of unpredictable structure.

[4] The thermodynamically controlled synthesis provides an error correction mechanism; even if a macrocycle closes without forming a catenane it can re-open and yield the desired interlocked structure later.

The approach also provides information on the affinity constants between different macrocycles thanks to the equilibrium between the individual components and the catenanes, allowing a titration-like experiment.

In one such system[9] one macrocycle is an electron deficient oligo Bis-bipyridinium ring and the other cycle is crown ether cyclophane based on para phenylene or naphthalene.

X-ray diffraction shows that due to pi-pi interactions the aromatic group of the cyclophane is held firmly inside the pyridinium ring.

Crystal structure of a catenane with a cyclobis(paraquat- p -phenylene) macrocycle reported by Stoddart and coworkers. [ 1 ]
Schematic animation of the template-directed synthesis of the bis-bipyridinium cyclophane / para -phenylene crown ether [2]catenane described in the text.
Crystal structure of a catenane reported by Sauvage and coworkers. [ 2 ]
Catenane derived from cyclobis(paraquat-p-phenylene)(a cyclophane with two viologen units) and a cyclic polyether (bis(para-phenylene-34-crown-10)). Carbon atoms of the two rotaxane components are colored green and purple. Otherwise, O = red, N = blue. H atoms are omitted. [ 8 ] The second of Nobel Prizes in Chemistry involving crown ethers was awarded for the design and synthesis of molecular machines . Many of these "machines" incorporate crown ethers as essential design components.
Catenanes
Pretzelanes
Handcuff-shaped catenanes