Sequerome is a web-based Java tool that acts as a front-end to BLAST queries and provides simplified access to web-distributed resources for protein and nucleic acid analysis.

Alternatively the user can also perform a variety of other actions including Sequence manipulation, analysis, and alignment using existing tools available in the web.

Sequerome directly queries the input sequence against a variety of databases/tools ('popular public domains' and 'privately hosted services') including BLAST, Protein Data Bank (PDB), REBASE and others, and generates outputs that are intuitive and easily comprehensible.

Access to various analysis tools, (including viewing a 3D structure-viewer from a PDBid), is provided as separate command buttons to analyze every record from a BLAST report before making a final selection.

Sequerome is compatible with essentially all Java-enabled, graphical browsers but is better accessed using Internet Explorer and can be run on most operating systems equipped with a Java Virtual Machine (JVM) and Jakarta Tomcat server.

End-users have to download plugins for viewing structure of molecules from the Protein Data Bank (e.g. PyMOL, Cn3D, Rasmol, SwissPDB, etc.).