The Marineros have acted as minor league affiliates for the Diablos Rojos del México and the Guerreros de Oaxaca since 2010.

[6] The Marineros won their first championship in 2010 under manager Donald Cañedo after beating the defending champions, the Ostioneros de Guaymas, four games to one.

[4] The Marineros secured the title with a 4–0 victory in Game 5, with Agustín Campa being named the LNS Final Series MVP.

[8] In April 2011, the Governor of Baja California, José Guadalupe Osuna Millán, announced that the state government was allocating MXN$500,000 to upgrades to the Marineros' facilities.

[11] The team would, however, continue their affiliation as a feeder club for the Diablos Rojos del México and the Guerreros de Oaxaca.

[11] The owner of the Marineros, Juan Manuel Arellano, also rescued the Cerveceros de Tecate [es], who had suffered economic and administrative issues, and helped the team return to professional baseball as members of the LNM.

[18] Esteban Loaiza joined the team on rehab assignment from the Diablos Rojos del México and earned the win in their season-opening victory over the Freseros de San Quintín [es].

[19][20] In his second game, Loaiza faced off against Freseros pitcher, two-time Olympic gold medallist Pedro Luis Lazo.

Prior to the 2016 season, the Marineros hired former Diablos Rojos del México player Víctor Bojórquez as their manager.

The Marineros went on to win their second consecutive LNM title after defeating the Freseros de San Quintín in six games in the championship series.