The 2000 UEFA Intertoto Cup finals were won by Udinese, Celta Vigo, and Stuttgart.

The game was awarded to Dinaburg with a score of 3–0 due to OD Trenčín fielding an ineligible player.

The game was awarded to LASK Linz with a score of 3–0 due to Hapoel Petah Tikva fielding an ineligible player.

Nea Salamis Famagusta won 6–2 on aggregate.

6–6 on aggregate, Leiftur won on away goals rule.

3–3 on aggregate, Standard Liège won on away goals rule.

Ceahlăul Piatra Neamţ won 9–4 on aggregate.

2–2 on aggregate, Västra Frölunda on away goals rule.

3–3 on aggregate, Velbazhd Kyustendil won on away goals rule.

The game was awarded to Auxerre with a score of 3–0 due to Stabæk fielding an ineligible player Denis Iliohen.

Ceahlăul Piatra Neamţ won 4–3 on aggregate.

1–1 on aggregate, Slaven Belupo won on away goals rule.