The 2007 UEFA Intertoto Cup was the 19th and penultimate[2] edition of the competition and took 50 entries.

1 Following Scotland and Norway's withdrawals, the free places were awarded to Romania and Andorra.

[4] 2 This match was played at Stadion Pod Goricom in Podgorica because Grbalj's ground in Radanovići does not meet UEFA standards.

5 This match was played at Linfield's Windsor Park in Belfast because Cliftonville's ground does not meet UEFA standards.

6 This match was played at Råsunda in Solna because Hammarby's ground does not meet UEFA standards.

7 This match was played at Richmond Park in Carmarthen because Llanelli's ground does not meet UEFA standards.

4 This match was played at Marakana in Belgrade because Hajduk's ground in Kula doesn't meet UEFA standards.

UEFA has expelled Legia from Intertoto Cup 2007 and banned the club from one future European season should they qualify again within the next five years.

8 This match was played at Råsunda in Solna because Hammarby's ground does not meet UEFA standards.

1 This match was played at Marakana in Belgrade because Hajduk's ground in Kula doesn't meet UEFA standards.

2 This match was played at Naftex Stadium in Burgas because Cherno More Varna's ground does not meet UEFA standards.

3 This match was played at Råsunda in Solna because Hammarby's ground does not meet UEFA standards.

Nine of the eleven co-winners which entered the UEFA Cup via the Intertoto won their qualifying ties and progressed to the first round proper.

Hamburg advanced to the round of 16 by defeating FC Zürich 3–1 on aggregate, while Atlético Madrid lost to Bolton Wanderers 1–0; leaving Hamburg as the only team remaining from this year's competition, being the overall champions of Intertoto Cup.