In the municipality of San Juan in the Archdiocese of Manila under the Parish of St. John the Baptist, Pinaglabanan, San Juan, Metro Manila a kindergarten class was started by Stephen Cebreros within the Augustinian Sisters compound along Santolan Rd, SJ.

In 1979, Alfredo Rodriguez was appointed by Cardinal Jaime L. Sin as parish priest and school director of HCPS, where he remained for almost 21 years.

[2] In June 2011, there was a turn-over of principalship from Nolan A. Que to Adolfo T. Paroni Jr. On March 28, 2014, the graduation of the Senior batch 2014, Frank ceased to be the school director pursuant to the decision of Cardinal Luis Antonio G. Tagle that a priest should only have one ministry, continuing to be the parish priest of St. John the Baptist Parish.

At present, Saint John the Baptist Catholic School belongs to cluster 7 under the directorship of Maxell Lowell C. Aranilla with Rany P. Geraldino as the assistant director and Maria Lourdes Torres as the principal respectively.

Develops the love and devotion to serve the Lord by participating in the Liturgical celebrations; the moderator coordinates with the parish for training and practicum; membership is open to boys from Grade 4 to 10.

Fosters a balanced and harmonious ministry through consolidation of existing pluralism, promotion of creativity and the celebration of cultural values.

Provides the highest level of artistic instruction and performance while maintaining a standard Preachers' values and integrity.

Trains and molds the students in exploring technology through computer techniques, soft wares etc.